版权说明 操作指南
首页 > 成果 > 详情

Sequencing, de novo assembly, annotation and SSR and SNP detection of sabaigrass (Eulaliopsis binata) transcriptome

认领
导出
Link by DOI
反馈
分享
QQ微信 微博
成果类型:
期刊论文
作者:
Zou, Dian;Chen, Xinbo*;Zou, Dongsheng
通讯作者:
Chen, Xinbo
作者机构:
[Chen, Xinbo; Zou, Dian; Zou, Dongsheng] Hunan Agr Univ, Coll Biosci & Biotechnol, Changsha 410128, Hunan, Peoples R China.
[Chen, Xinbo] Hunan Agr Univ, Key Lab Crop Germplasm Innovat & Utilizat Hunan P, Changsha 410128, Hunan, Peoples R China.
通讯机构:
[Chen, Xinbo] H
Hunan Agr Univ, Coll Biosci & Biotechnol, Changsha 410128, Hunan, Peoples R China.
语种:
英文
关键词:
Eulaliopsis binata;Transcriptome sequencing;Annotation;Fiber;Cell wall
期刊:
Genomics
ISSN:
0888-7543
年:
2013
卷:
102
期:
1
页码:
57-62
基金类别:
The E. binata leaf samples were collected at the same time (June 2nd) and in the same part of plant (2/3 of plant height) from the Sabaigrass Germplasm Resources Garden at the University Farm of Hunan Agricultural University in Changsha City, Hunan Province, China. The fresh leaves were steeped in liquid nitrogen immediately after collection, and then kept at − 80 °C. This garden was established in 2008 under the support of the National High Technology Research and Development Program of China (No 2006AA02Z249). All the resources are originally collected from wild clusters in different counties of the provinces in south of China. All the cluster locations are government owned lands and are not protected in any way. No specific permissions were required for these resource sample collections by the national policy and this funding national program guideline. The detailed original localization and habitat information of the representative twenty E. binata clusters used in this study were presented in Table 4 .
机构署名:
本校为第一且通讯机构
院系归属:
生物科学技术学院
摘要:
Eulaliopsis binata is one of the best fiber grass plants for its high fiber quality and production. Large scale trancriptome sequencing of E. binata was first performed using mixed leaf samples of 20 wild clusters. A total of 26,438,832 clean reads were generated and were assembled into 59,134 isogenes with an average length of 845. bp. BLAST against the NCBI non-redundant protein, KEGG and GO databases has classified these isogenes into functional categories for understanding gene functions and regulation pathways. Only 15.0% of the assembled ...

反馈

验证码:
看不清楚,换一个
确定
取消

成果认领

标题:
用户 作者 通讯作者
请选择
请选择
确定
取消

提示

该栏目需要登录且有访问权限才可以访问

如果您有访问权限,请直接 登录访问

如果您没有访问权限,请联系管理员申请开通

管理员联系邮箱:yun@hnwdkj.com