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Genome sequence and analysis of the tuber crop potato.

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WOS被引频次:668
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成果类型:
期刊论文
作者:
Xu, Xun;Pan, Shengkai;Cheng, Shifeng;Zhang, Bo;Mu, Desheng;Ni, Peixiang;Zhang, Gengyun;Yang, Shuang;Li, Ruiqiang;Wang, Jun;Orjeda, Gisella;Guzman, Frank;Torres, Michael;Lozano, Roberto;Ponce, Olga;Martinez, Diana;De la Cruz, German;Chakrabarti, S K;Patil, Virupaksh U;Skryabin, Konstantin G;Kuznetsov, Boris B;Ravin, Nikolai V;Kolganova, Tatjana V;Beletsky, Alexey V;Mardanov, Andrei V;Di Genova, Alex;Bolser, Daniel M;Martin, David M A;Li, Guangcun;Yang, Yu;Kuang, Hanhui;Hu, Qun;Xiong, Xingyao;Bishop, Gerard J;Sagredo, Boris;Mejia, Nilo;Zagorski, Wlodzimierz;Gromadka, Robert;Gawor, Jan;Szczesny, Pawel;Huang, Sanwen;Zhang, Zhonghua;Liang, Chunbo;He, Jun;Li, Ying;He, Ying;Xu, Jianfei;Zhang, Youjun;Xie, Binyan;Du, Yongchen;Qu, Dongyu;Bonierbale, Merideth;Ghislain, Marc;Herrera, Maria del Rosario;Giuliano, Giovanni;Pietrella, Marco;Perrotta, Gaetano;Facella, Paolo;O'Brien, Kimberly;Feingold, Sergio E;Barreiro, Leandro E;Massa, Gabriela A;Diambra, Luis;Whitty, Brett R;Vaillancourt, Brieanne;Lin, Haining;Massa, Alicia N;Geoffroy, Michael;Lundback, Steven;DellaPenna, Dean;Buell, C Robin;Sharma, Sanjeev Kumar;Marshall, David F;Waugh, Robbie;Bryan, Glenn J;Destefanis, Marialaura;Nagy, Istvan;Milbourne, Dan;Thomson, Susan J;Fiers, Mark;Jacobs, Jeanne M E;Nielsen, Kare L;Sonderkaer, Mads;Iovene, Marina;Torres, Giovana A;Jiang, Jiming;Veilleux, Richard E;Bachem, Christian W B;de Boer, Jan;Borm, Theo;Kloosterman, Bjorn;van Eck, Herman;Datema, Erwin;Hekkert, Bas te Lintel;Goverse, Aska;van Ham, Roeland C H J;Visser, Richard G F
通讯作者:
Huang, SW
作者机构:
[Lundback, Steven; Massa, Alicia N; Vaillancourt, Brieanne; Buell, C Robin; Geoffroy, Michael; Lin, Haining; DellaPenna, Dean] Michigan State Univ, E Lansing, MI 48824 USA.
[Lozano, Roberto; Torres, Michael; De la Cruz, German; Martinez, Diana; Guzman, Frank; Orjeda, Gisella; Ponce, Olga] Cayetano Heredia Univ, Genom Res Unit, Lima 13, Peru.
[Lozano, Roberto; Torres, Michael; De la Cruz, German; Martinez, Diana; Guzman, Frank; Orjeda, Gisella; Ponce, Olga] San Cristobal Huamanga Univ, Biotechnol & Plant Genet Lab, Ayacucho, Peru.
[Liang, Chunbo; Li, Ying; He, Jun; Zhang, Zhonghua; Xie, Binyan; Huang, Sanwen; Zhang, Youjun; Qu, Dongyu; Du, Yongchen; Xu, Jianfei; He, Ying] Chinese Acad Agr Sci, Key Lab Hort Crops Genet Improvement, Sino Dutch Joint Lab Hort Genom, Inst Vegetables & Flowers,Minist Agr, Beijing 100081, Peoples R China.
[Jiang, Jiming; Torres, Giovana A; Iovene, Marina] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA.
通讯机构:
[Huang, SW] Chinese Acad Agr Sci, Key Lab Hort Crops Genet Improvement, Sino Dutch Joint Lab Hort Genom, Inst Vegetables & Flowers,Minist Agr, Beijing 100081, Peoples R China.
语种:
英文
期刊:
Nature
ISSN:
0028-0836
年:
2011
卷:
475
期:
7355
页码:
189-U94
文献类别:
WOS:Article
所属学科:
ESI学科类别:分子生物学&遗传学;WOS学科类别:Multidisciplinary Sciences
入藏号:
WOS:000292690500042;PMID:21743474
基金类别:
EU [APOPHYS EU-QLRT-2001-01849]; US Department of Agriculture National Institute of Food and Agriculture [2008-55300-04757, 2009-85606-05673]; "863'' National High Tech Research Development Program in China [2006AA100107]; "973'' National Key Basic Research Program in China [2006CB101904, 2007CB815703, 2007CB815705, 2009CB119000]; Board of Wageningen University and Research Centre; CAPES Brazilian Ministry of Education; Chinese Academy of Agricultural Sciences; Chinese Ministry of Agriculture; Chinese Ministry of Finance [1251610601001]; Chinese Ministry of Science and Technology [2007DFB30080]; China Postdoctoral Science Foundation [20070420446]; CONICET (Argentina); DAFF Research Stimulus Fund [07-567]; CONICYT-Chile [PBCT-PSD-03]; Danish Council for Strategic Research Programme Commission on Health, Food and Welfare [2101-07-0116]; Danish Council for Strategic Research Programme Commission on Strategic Growth Technologies [2106-07-0021]; FINCyT [099-FINCyT-EQUIP-2009, 076-FINCyT-PIN-2008]; Prestamo BID [1663/OC-PE]; Fund for Economic Structural Support (FES); HarvestPlus Challenge Program; Indian Council of Agricultural Research; INIA-Ministry of Agriculture of Chile; Instituto Nacional de Innovacion Agraria-Ministry of Agriculture of Peru; Instituto Nacional de Tecnologia Agropecuaria (INTA); Italian Ministry of Research (Special Fund for Basic Research); International Potato Center; LBMG of Center for Genome Regulation and Center for Mathematical Modeling; Universidad de Chile [UMI 2807 CNRS]; Ministry of Education and Science of Russia [02.552.11.7073]; National Nature Science Foundation of China [30671319, 30725008, 30890032, 30971995]; Natural Science Foundation of Shandong Province in China [Y2006D21]; Netherlands Technology Foundation (STW); Netherlands Genomics Initiative (NGI); Netherlands Ministries of Economic Affairs (EZ) and Agriculture (LNV); New Zealand Institute for Crop & Food Research Ltd Strategic Science Initiative; Perez Guerrero Fund; Peruvian Ministry of Agriculture-Technical Secretariat of coordination; CGIAR; Peruvian National Council of Science and Technology (CONCYTEC); Polish Ministry of Science and Higher Education [47/PGS/2006/01]; Programa Cooperativo para el Desarrollo Tecnologico Agroalimentario y Agroindustrial del Cono Sur (PROCISUR); Project Programa Bicentenario de Ciencia y Tecnologia - Conicyt; PBCT - Conicyt [PSD-03]; Russian Foundation for Basic Research [09-04-12275]; Secretaria de Ciencia y Tecnologia (SECyT) actual Ministerio de Ciencia y Tecnologia (MINCyT), Argentina; Shenzhen Municipal Government of China [CXB200903110066A, ZYC200903240077A, ZYC200903240076A]; Solexa project [272-07-0196]; Inter-American Council for Integral Development (FEMCIDI); Teagasc; Teagasc Walsh Fellowship Scheme; New Zealand Institute for Plant & Food Research Ltd; Scottish Government Rural and Environment Research and Analysis Directorate (RERAD); Department for Environment, Food and Rural Affairs (DEFRA; Agriculture and Horticulture Development Board - Potato Council; UK Biotechnology and Biological Sciences Research Council [BB/F012640]; US National Science Foundation [DBI-0604907/DBI-0834044]; Virginia Agricultural Experiment Station USDA [135853]; Wellcome Trust [WT 083481]
机构署名:
本校为其他机构
院系归属:
园艺园林学院
理学院
生物科学技术学院
摘要:
Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop.
参考文献:
Albach DC, 2001, SYST BOT, V26, P242
Altschul SF, 1997, NUCLEIC ACIDS RES, V25, P3389, DOI 10.1093/nar/25.17.3389
Arumuganathan K., 1991, PLANT MOL BIOL REP, V9, P208, DOI DOI 10.1007/BF02672069
Ashburner M, 2000, NAT GENET, V25, P25
Bailey T L, 1995, Proc Int Conf Intell Syst Mol Biol, V3, P21

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