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Noncoding and coding transcriptome analysis reveals the regulation roles of long noncoding RNAs in fruit development of hot pepper (Capsicum annuum L.)

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WOS被引频次:8
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成果类型:
期刊论文
作者:
Ou, Lijun;Liu, Zhoubin;Zhang, Zhuqing;Wei, Ge;Zhang, Yuping;Kang, Linyu;Yang, Bozhi;Yang, Sha;Lv, Junheng;Liu, Yuhua;Chen, Wenchao;Dai, Xiongze;Li, Xuefeng;Zhou, Shudong;Ma, Yanqing*;Zou, Xuexiao*
通讯作者:
Ma, Yanqing;Zou, Xuexiao
作者机构:
[Lv, Junheng; Dai, Xiongze; Yang, Bozhi; Zhou, Shudong; Kang, Linyu; Chen, Wenchao; Zhang, Zhuqing; Ma, Yanqing; Zou, Xuexiao; Liu, Zhoubin; Li, Xuefeng; Ou, Lijun; Wei, Ge; Yang, Sha; Liu, Yuhua] Hunan Vegetable Res Inst, Changsha 410125, Hunan, Peoples R China.
[Lv, Junheng; Kang, Linyu; Liu, Zhoubin; Zou, Xuexiao; Liu, Yuhua] Hunan Univ, Grad Sch, Longping Branch, Changsha 410125, Hunan, Peoples R China.
[Zhang, Yuping] Hunan Agr Univ, Coll Resources & Environm, Changsha 410125, Hunan, Peoples R China.
通讯机构:
[Ma, YQ; Zou, XX] Hunan Vegetable Res Inst, Changsha 410125, Hunan, Peoples R China.
[Zou, Xuexiao] Hunan Univ, Grad Sch, Longping Branch, Changsha 410125, Hunan, Peoples R China.
语种:
英文
关键词:
Long non-coding RNAs (lncRNAs);Fruit development;Fruit quality;RNA-seq;Capsicum annuum L.
期刊:
Plant Growth Regulation
ISSN:
0167-6903
年:
2017
卷:
83
期:
1
页码:
141-156
文献类别:
WOS:Article
所属学科:
ESI学科类别:植物学&动物科学;WOS学科类别:Plant Sciences
入藏号:
基金类别:
China Agriculture Research System [CARS-25-A-8]
机构署名:
本校为其他机构
院系归属:
资源环境学院
摘要:
Long non-coding RNAs (lncRNAs) have been shown to play critical regulatory roles in diverse biological processes in plants. However, the presence of lncRNAs and their potential functions in hot pepper are still unknown. Using strand-specific RNA-sequencing, a total of 2505 putative lncRNAs were identified in the fruits of hot pepper. The lncRNAs were transcribed from all pepper chromosomes and 95.37% of them originated from intergenic regions. And 1066 lncRNAs were differentially expressed among the four samples during pepper fruit development. Many potential protein-coding (PC) genes targeted by lncRNAs with cis or trans-acting were also identified. Six of them and their target genes were further validated by quantitative RT-PCR. Some of these target genes were involved in plant hormone signal transduction, cell wall formation and carotenoid biosynthesis, indicating the roles of lncRNAs in the regulation of fruit development and quality. This study identified a large number of lncRNAs in hot pepper, thereby providing some insights into the fruit development of hot pepper.
参考文献:
Abraham-Juárez MD, Rocha-Granados MD, López MG, Rivera-Bustamante RF, Ochoa-Alejo N (2008) Virus-induced silencing of Comt, pAmt and Kas genes results in a reduction of capsaicinoid accumulation in chili pepper fruits. Planta 227:681–695
Adams-Phillips L, Barry C, Giovannoni J (2004) Signal transduction systems regulating fruit ripening. Trends Plant Sci 9:331–338
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11(10):R106
Ariel F, Romero-Barrios N, Jégu T, Benhamed M, Crespi M (2015) Battles and hijacks: noncoding transcription in plants. Trends Plant Sci 20(6):362–371
Aza-González C, Núñez-Palenius HG, Ochoa-Alejo N (2011) Molecular biology of capsaicinoid biosynthesis in chili pepper ( spp.). Plant Cell Rep 30:695–706

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