版权说明 帮助中心
首页 > 成果 > 详情

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

ESI高被引SCI-EMedline
WOS被引频次:281
认领
导出
Link by DOI
反馈
分享
QQ微信 微博
成果类型:
期刊论文
作者:
Liu, Shengyi;Liu, Yumei;Yang, Xinhua;Tong, Chaobo;Edwards, David;Parkin, Isobel A. P.;Zhao, Meixia;Ma, Jianxin;Yu, Jingyin;Huang, Shunmou;Wang, Xiyin;Wang, Junyi;Lu, Kun;Fang, Zhiyuan;Bancroft, Ian;Yang, Tae-Jin;Hu, Qiong;Wang, Xinfa;Yue, Zhen;Li, Haojie;Yang, Linfeng;Wu, Jian;Zhou, Qing;Wang, Wanxin;King, Graham J.;Pires, J. Chris;Lu, Changxin;Wu, Zhangyan;Sampath, Perumal;Wang, Zhuo;Guo, Hui;Pan, Shengkai;Yang, Limei;Min, Jiumeng;Zhang, Dong;Jin, Dianchuan;Li, Wanshun;Belcram, Harry;Tu, Jinxing;Guan, Mei;Qi, Cunkou;Du, Dezhi;Li, Jiana;Jiang, Liangcai;Batley, Jacqueline;Sharpe, Andrew G.;Park, Beom-Seok;Ruperao, Pradeep;Cheng, Feng;Waminal, Nomar Espinosa;Huang, Yin;Dong, Caihua;Wang, Li;Li, Jingping;Hu, Zhiyong;Zhuang, Mu;Huang, Yi;Huang, Junyan;Shi, Jiaqin;Mei, Desheng;Liu, Jing;Lee, Tae-Ho;Wang, Jinpeng;Jin, Huizhe;Li, Zaiyun;Li, Xun;Zhang, Jiefu;Xiao, Lu;Zhou, Yongming;Liu, Zhongsong;Liu, Xuequn;Qin, Rui;Tang, Xu;Liu, Wenbin;Wang, Yupeng;Zhang, Yangyong;Lee, Jonghoon;Kim, Hyun Hee;Denoeud, France;Xu, Xun;Liang, Xinming;Hua, Wei;Wang, Xiaowu;Wang, Jun;Chalhoub, Boulos;Paterson, Andrew H.
通讯作者:
Liu, SY
作者机构:
[Jin, Dianchuan; Wang, Li; Wang, Jinpeng; Wang, Xiyin] Hebei United Univ, Ctr Genom & Computat Biol, Sch Life Sci, Tangshan 063000, Peoples R China.
[Jin, Dianchuan; Wang, Li; Wang, Jinpeng; Wang, Xiyin] Hebei United Univ, Sch Sci, Tangshan 063000, Peoples R China.
[Li, Xun; Guan, Mei; Liu, Zhongsong] Hunan Agr Univ, Coll Agron, Changsha 410128, Hunan, Peoples R China.
[Tang, Xu; Li, Jingping; Lee, Tae-Ho; Wang, Yupeng; Zhang, Dong; Paterson, Andrew H.; Jin, Huizhe; Wang, Xiyin; Guo, Hui] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30605 USA.
[Wu, Jian; Wang, Xiaowu; Fang, Zhiyuan; Liu, Yumei; Cheng, Feng; Wang, Wanxin; Zhuang, Mu; Zhang, Yangyong; Yang, Limei] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Key Lab Biol & Genet Improvement Hort Crops, Minist Agr, Beijing 10081, Peoples R China.
通讯机构:
[Liu, Shengyi] Chinese Acad Agr Sci, Oil Crops Res Inst, Key Lab Biol & Genet Improvement Oil Crops, Minist Agr PRC, Wuhan 430062, Peoples R China.
语种:
英文
期刊:
NATURE COMMUNICATIONS
ISSN:
2041-1723
年:
2014
卷:
5
页码:
3930
文献类别:
WOS:Article
所属学科:
ESI学科类别:分子生物学&遗传学;WOS学科类别:Multidisciplinary Sciences
入藏号:
WOS:000337505100002;PMID:24852848
基金类别:
National Basic Research Program of China [011CB109300, 2012CB113906, 2012CB723007, 2006CB101600]; National Natural Science Foundation of China [3067134, 30671119, 31301039]; National High Technology Research and Development Program [2013AA102602, 2012AA100105, 2012AA100104]; China Agriculture Research System [CARS-13, CARS-25-A]; Core Research Budget of the Non-profit Governmental Research Institution [1610172010005]; Special Fund for Agro-scientific Research in the Public Interest [201103016]; China-Australia collaboration project [2010DFA31730]; UK Biotechnology and Biological Sciences Research Council [BB/E017363/1]; Australian Research Council [LP0882095, LP0883462, DP0985953, LP110100200]; Next-Generation BioGreen 21 Program [PJ008944, PJ008202]; US National Science Foundation [IOS 0638418, DBI 0849896, MCB 1021718]
机构署名:
本校为其他机构
院系归属:
农学院
摘要:
Polyploidization has provided much genetic variation for plant adaptive evolution, but the mechanisms by which the molecular evolution of polyploid genomes establishes genetic architecture underlying species differentiation are unclear. Brassica is an ideal model to increase knowledge of polyploid evolution. Here we describe a draft genome sequence of Brassica oleracea, comparing it with that of its sister species B. rapa to reveal numerous chromosome rearrangements and asymmetrical gene loss in duplicated genomic blocks, asymmetrical amplification of transposable elements, differential gene co-retention for specific pathways and variation in gene expression, including alternative splicing, among a large number of paralogous and orthologous genes. Genes related to the production of anticancer phytochemicals and morphological variations illustrate consequences of genome duplication and gene divergence, imparting biochemical and morphological variation to B. oleracea. This study provides insights into Brassica genome evolution and will underpin research into the many important crops in this genus.
参考文献:
U.S. Department of Agriculture, Agricultural Research Service. USDA National Nutrient Database for Standard Reference, Release 26-Vegetables and Vegetable Products. (2013).
Kopsell, D. A. & Kopsell, D. E. Accumulation and bioavailability of dietary carotenoids in vegetable crops. Trends Plant Sci. 11, 499–507 (2006).
Halkier, B. A. & Gershenzon, J. Biology and biochemistry of glucosinolates. Annu. Rev. Plant Biol. 57, 303–333 (2006).
Khwaja, F. S., Wynne, S., Posey, I. & Djakiew, D. 3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells. Cancer Prev. Res. (Phila) 2, 566–571 (2009).
Li, Y. et al. Sulforaphane, a dietary component of broccoli/broccoli sprouts, inhibits breast cancer stem cells. Clin. Cancer Res. 16, 2580–2590 (2010).

反馈

验证码:
看不清楚,换一个
确定
取消

成果认领

标题:
用户 作者 通讯作者
请选择
请选择
确定
取消

提示

该栏目需要登录且有访问权限才可以访问

如果您有访问权限,请直接 登录访问

如果您没有访问权限,请联系管理员申请开通

管理员联系邮箱:yun@hnwdkj.com