TBtools:An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
作者:
Chen, Chengjie;Chen, Hao;Zhang, Yi;Thomas, Hannah R.;Frank, Margaret H.;...
期刊:
分子植物 ,2020年13(8):1194-1202 ISSN:1674-2052
通讯作者:
Xia, Rui
作者机构:
[Chen, Chengjie; Xia, Rui; Zhang, Yi] South China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510640, Guangdong, Peoples R China.;[Chen, Chengjie; Xia, Rui; Zhang, Yi; He, Yehua] South China Agr Univ, Guangdong Lab Lingnan Modern Agr, Guangzhou 510640, Guangdong, Peoples R China.;[Chen, Chengjie; Xia, Rui; Zhang, Yi; He, Yehua] South China Agr Univ, Key Lab Biol & Germplasm Enhancement Hort Crops S, Minist Agr & Rural Affair, Guangzhou 510640, Peoples R China.;[Chen, Chengjie; Xia, Rui; Zhang, Yi; He, Yehua] South China Agr Univ, Coll Hort, Guangzhou 510640, Guangdong, Peoples R China.;[Chen, Hao] Hunan Agr Univ, Oilseed Crops Inst, Changsha 410128, Peoples R China.
通讯机构:
[Xia, Rui] S;South China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510640, Guangdong, Peoples R China.;South China Agr Univ, Guangdong Lab Lingnan Modern Agr, Guangzhou 510640, Guangdong, Peoples R China.;South China Agr Univ, Key Lab Biol & Germplasm Enhancement Hort Crops S, Minist Agr & Rural Affair, Guangzhou 510640, Peoples R China.;South China Agr Univ, Coll Hort, Guangzhou 510640, Guangdong, Peoples R China.
关键词:
TBtools;bioinformatics;big data;data visulization;gene family
摘要:
TBtools, a stand-alone bioinformatics software with a user-friendly interface is presented in this study. The toolkit incorporates over 130 functions, which are designed to meet the increasing demand for big-data analyses, ranging from bulk sequence processing to interactive data visualization. Its robustness has been validated by tens of thousands of users, making it a handy and useful toolkit for biologists. © 2020 The AuthorThe rapid development of high-throughput sequencing techniques has led biology into the big-data era. Data analyses using various bioinformatics tools rely on programming and command-line environments, which are challenging and time-consuming for most wet-lab biologists. Here, we present TBtools (a Toolkit for Biologists integrating various biological data-handling tools), a stand-alone software with a user-friendly interface. The toolkit incorporates over 130 functions, which are designed to meet the increasing demand for big-data analyses, ranging from bulk sequence processing to interactive data visualization. A wide variety of graphs can be prepared in TBtools using a new plotting engine (“JIGplot”) developed to maximize their interactive ability; this engine allows quick point-and-click modification of almost every graphic feature. TBtools is platform-independent software that can be run under all operating systems with Java Runtime Environment 1.6 or newer. It is freely available to non-commercial users at https://github.com/CJ-Chen/TBtools/releases. © 2020 The Author
语种:
英文
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Antioxidant mechanism of tea polyphenols and its impact on health benefits
作者:
Yan, Zhaoming;Zhong, Yinzhao;Duan, Yehui;Chen, Qinghua* ;Li, Fengna*
期刊:
动物营养(英文) ,2020年6(2):115-123 ISSN:2405-6545
通讯作者:
Chen, Qinghua;Li, Fengna
作者机构:
[Chen, Qinghua; Yan, Zhaoming] Hunan Agr Univ, Coll Anim Sci & Technol, Changsha 410128, Peoples R China.;[Duan, Yehui; Li, Fengna; Yan, Zhaoming] Chinese Acad Sci, Hunan Prov Engn Res Ctr Hlth Livestock & Poultry, Lab Anim Nutr Physiol & Metab Proc,Minist Agr,Sci, Key Lab Agroecol Proc Subtrop Reg,Inst Subtrop Ag, Changsha 410125, Peoples R China.;[Zhong, Yinzhao] South China Agr Univ, Coll Anim Sci, Guangzhou 510642, Peoples R China.;[Li, Fengna] Hunan Collaborat Innovat Ctr Utilizat Bot Funct I, Hunan Coinnovat Ctr Anim Prod Safety, Changsha 410128, Peoples R China.
通讯机构:
[Chen, Qinghua; Li, Fengna] H;[Li, Fengna] C;Hunan Agr Univ, Coll Anim Sci & Technol, Changsha 410128, Peoples R China.;Chinese Acad Sci, Hunan Prov Engn Res Ctr Hlth Livestock & Poultry, Lab Anim Nutr Physiol & Metab Proc,Minist Agr,Sci, Key Lab Agroecol Proc Subtrop Reg,Inst Subtrop Ag, Changsha 410125, Peoples R China.;Hunan Collaborat Innovat Ctr Utilizat Bot Funct I, Hunan Coinnovat Ctr Anim Prod Safety, Changsha 410128, Peoples R China.
关键词:
Tea polyphenols;Antioxidant activities;Animal production;Signal transduction pathway
摘要:
Tea trees have a long history of cultivation and utilization.People in many countries have the habit of drinking tea and choosing green tea,oolong tea,or black tea according to different regions and personal tastes.Tea polyphe nols are a general term for polyphenol co mpounds in tea,and has been shown to have good effects on antioxidant,anti-inflammatory,cancer prevention and regulation of lipid metabolism.Tea polyphenols have been widely used as antioxidants in disease treatment and animal husbandry,but their specific mechanism of action needs to be further clarified and revealed.This review focuses on the definition,classification,antioxidant activity and the regulation of signaling pathways of tea polyphenols.This paper also aims to examine the application of tea polyphenols in human and animal health,providing a scientific basis for this application in addition to proposing future directions for the development of this resource.
语种:
英文
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