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The Dynamics of Long Terminal Repeat Retrotransposon Proliferation and Decay Drive the Evolution of Genome Size Variation in Capsicum

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成果类型:
期刊论文
作者:
Liu, Qian;Liu, Pinbo;Wang, Shenghui;Yang, Jian;Dai, Liangying;...
通讯作者:
Wang, YS;Zheng, JY
作者机构:
[Liu, Qian; Yang, Jian; Wang, Shenghui; Liu, Pinbo; Wang, Yunsheng; Dai, Liangying] Hunan Agr Univ, Coll Plant Protect, Changsha 410128, Peoples R China.
[Zheng, Jingyuan] Hunan Acad Agr Sci, Hunan Vegetable Res Inst, Changsha 410125, Peoples R China.
通讯机构:
[Zheng, JY ; Wang, YS ] H
Hunan Agr Univ, Coll Plant Protect, Changsha 410128, Peoples R China.
Hunan Acad Agr Sci, Hunan Vegetable Res Inst, Changsha 410125, Peoples R China.
语种:
英文
关键词:
Capsicum;comparative genomics;genome size evolution;transposable element;long terminal repeat retrotransposon
期刊:
Plants-Basel
ISSN:
2223-7747
年:
2025
卷:
14
期:
14
页码:
2136-
基金类别:
Q.L., Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing—original draft, Writing—review and editing, P.L., Data curation, Methodology, Visualization, Software, S.W., Data curation, Methodology, Investigation, J.Y., Data curation, Methodology, Investigation, L.D., Data curation, Methodology, Investigation, J.Z., Conceptualization, Methodology, Supervision, Writing—review and editing, Y.W., Conceptualization, Methodology, Resources, Supervision, Funding acquisition, Writing—original draft, Writing—review and editing. All authors have read and agreed to the published version of the manuscript. This work was supported by funding from the National Natural Science Foundation of China (grant number 32472759).
机构署名:
本校为第一且通讯机构
院系归属:
植物保护学院
摘要:
Capsicum (pepper) is an economically vital genus in the Solanaceae family, with most species possessing about 3 Gb genomes. However, the recently sequenced Capsicum rhomboideum (~1.7 Gb) represents the first reported case of an extremely compact genome in Capsicum, providing a unique and ideal model for studying genome size evolution. To elucidate the mechanisms driving this variation, we performed comparative genomic analyses between the compact Capsicum rhomboideum and the reference Capsicum annuum cv. CM334 (~2.9 Gb). Although their genome size differences initially suggested whole-genome d...

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