EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research

首页 > 成果 > 详情

认领

导出

Link by DOI

反馈

作者信息关键词期刊信息基础信息归属信息摘要

成果类型：

期刊论文

作者：

Bai, Defeng;Chen, Tong;Xun, Jiani;Ma, Chuang;Luo, Hao;...

通讯作者：

Chen, T;Wen, T;Chen, SF;Li, GL;Gao, Yunyun;Liu, YX

作者机构：

[Li, Xin; Yang, Haifei; Liu, Yong-Xin; Bai, Defeng; Gao, Yunyun; Wan, Xiulin; Yousuf, Salsabeel; Zhang, Tianyuan; Hou, Huiyu; Xun, Jiani; Zeng, Meiyin; Luo, Hao; Lv, Hujie; Ma, Chuang; Wang, Yao] Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Genome Anal Lab, Minist Agr & Rural Affairs, Shenzhen, Guangdong, Peoples R China.

[Chen, T; Chen, Tong] China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, State Key Lab Qual Ensurance & Sustainable Use Da, Beijing, Peoples R China.

[Wen, Tao] Nanjing Agr Univ, Coll Resource & Environm Sci, Nanjing, Jiangsu, Peoples R China.

[Chen, Shifu] Gannan Med Univ, LifeX Inst, Sch Med Technol, Ganzhou, Peoples R China.

[Li, GL; Li, Guoliang] Jiangxi Agr Univ, Coll Forestry, Jiangxi Prov Key Lab Conservat Biol, Nanchang, Jiangxi, Peoples R China.

通讯机构：

[Chen, SF ] G

[Li, GL ] J

[Gao, YY; Chen, T ; Liu, YX ] C

[Wen, T ] N

China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, State Key Lab Qual Ensurance & Sustainable Use Da, Beijing, Peoples R China.

语种：

英文

关键词：

metagenome;microbiome;microbiota;pipeline;visualization

期刊：

iMeta

ISSN：

2770-5986

年：

2025

卷：

期：

页码：

e70001

DOI：

10.1002/imt2.70001

基金类别：

National Natural Science Foundation of China [32470055, U23A20148]; Agricultural Science and Technology Innovation Program [CAAS-ZDRW202308]; China Postdoctoral Science Foundation [2024M753580]; Fundamental Research Funds for the Central Public Welfare Research Institutes [ZZ13-YQ-095]; Scientific and Technology Innovation Project of China Academy of Chinese Medical Sciences [CI2021A04115]; Scientific and technological innovation project of China Academy of Chinese Medical Sciences [CI2023E002, 2060302]

机构署名：

本校为其他机构

院系归属：

动物医学院

摘要：

Shotgun metagenomics has become a pivotal technology in microbiome research, enabling in-depth analysis of microbial communities at both the high-resolution taxonomic and functional levels. This approach provides valuable insights of microbial diversity, interactions, and their roles in health and disease. However, the complexity of data processing and the need for reproducibility pose significant challenges to researchers. To address these challenges, we developed EasyMetagenome, a user-friendly pipeline that supports multiple analysis methods, including quality control and host removal, read...

反馈

产权有误：本人成果被他人认领

数据有误：数据基本信息有误

归属有误：成果的院系归属、机构署名归属有误

其他原因：

验证码：

看不清楚，换一个

确定

取消

成果认领

标题：

用户	作者	通讯作者	--
	请选择	请选择	--

确定

取消

EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research

反馈

成果认领

提示

该栏目需要登录且有访问权限才可以访问