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Comparative transcriptome analyses of genes involved in sulforaphane metabolism at different treatment in Chinese kale using full-length transcriptome sequencing

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成果类型:
期刊论文
作者:
Wu, Qiuyun;Wang, Junwei;Mao, Shuxiang;Xu, Haoran;Wu, Qi;...
通讯作者:
Huang, Ke
作者机构:
[Wu, Qiuyun; Wang, Junwei; Mao, Shuxiang; Xu, Haoran; Wu, Qi; Liang, Mantian; Yuan, Yiming; Liu, Mingyue; Huang, Ke] Hunan Agr Univ, Coll Hort & Landscape, 1 Nongda Rd, Changsha 410128, Hunan, Peoples R China
通讯机构:
[Huang, Ke] H
Hunan Agr Univ, Coll Hort & Landscape, 1 Nongda Rd, Changsha 410128, Hunan, Peoples R China.
语种:
英文
关键词:
Single-molecule real-time sequencing;Next-generation sequencing;Chinese kale;Sulforaphane;De novo assembly
期刊:
BMC Genomics
ISSN:
1471-2164
年:
2019
卷:
20
期:
1
页码:
1-13
基金类别:
This work was supported byNational Natural Science Foundation of China (No. 31772325), Hunan Provincial Natural Science Foundation of China (2017JJ2118,2018JJ3217), Hunan Provincial Sci-Tech Project (2018NK2022) and Scientific Research Fund of Hunan Provincial Education Department (16A093). The funders did not have any role in the design, collection, analysis, and interpretation of data and in writing the manuscript.
机构署名:
本校为第一且通讯机构
院系归属:
园艺园林学院
摘要:
Background: Sulforaphane is a natural isothiocyanate available from cruciferous vegetables with multiple characteristics including antioxidant, antitumor and anti-inflammatory effect. Single-molecule real-time (SMRT) sequencing has been used for long-read de novo assembly of plant genome. Here, we investigated the molecular mechanism related to glucosinolates biosynthesis in Chinese kale using combined NGS and SMRT sequencing. Results: SMRT sequencing produced 185,134 unigenes, higher than 129,325 in next-generation sequencing (NGS). NaCl (75 m...

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