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MetaDP: a comprehensive web server for disease prediction of 16S rRNA metagenomic datasets

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成果类型:
期刊论文
作者:
Xilin Xu;Aiping Wu;Xinlei Zhang;Mingming Su;Taijiao Jiang;...
通讯作者:
Taijiao Jiang<&wdkj&>Zhe-Ming Yuan
作者机构:
[Zhe-Ming Yuan] Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha, China
[Aiping Wu; Taijiao Jiang] Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005
Suzhou Institute of Systems Medicine, Suzhou, China
[Xinlei Zhang] Suzhou Geneworks Technology Company Limited, Suzhou, China
[Mingming Su] Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
通讯机构:
[Taijiao Jiang] C
[Zhe-Ming Yuan] H
Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005
Suzhou Institute of Systems Medicine, Suzhou, China<&wdkj&>Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha, China
语种:
英文
关键词:
Disease prediction;16S rRNA;Metagenomics;Intestinal bowel syndrome
期刊:
生物物理学报
ISSN:
1000-6737
年:
2016
卷:
2
期:
5-6
页码:
106-115
基金类别:
supported by the Science and Technology Planning Projects of Changsha, China
机构署名:
本校为第一且通讯机构
院系归属:
植物保护学院
摘要:
High-throughput sequencing-based metagenomics has garnered considerable interest in recent years. Numerous methods and tools have been developed for the analysis of metagenomic data. However, it is still a daunting task to install a large number of tools and complete a complicated analysis, especially for researchers with minimal bioinformatics backgrounds. To address this problem, we constructed an automated software named MetaDP for 16S rRNA sequencing data analysis, including data quality control, operational taxonomic unit clustering, diversity analysis, and disease risk prediction modelin...

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