iPReditor-CMG: Improving a predictive RNA editor for crop mitochondrial genomes using genomic sequence features and an optimal support vector machine

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成果类型：

期刊论文

作者：

Qin, Sidong;Fan, Yanjun;Hu, Shengnan;Wang, Yongqiang;Wang, Ziqi;...

通讯作者：

Siqiao Tan<&wdkj&>Wei Zhou

作者机构：

[Qin, Sidong; Wang, Ziqi; Dai, Zhijun; Hu, Shengnan; Wang, Yongqiang; Zhou, Wei; Fan, Yanjun; Cao, Yixiang] Hunan Agr Univ, Hunan Prov Engn & Technol Res Ctr Agr Big Data Ana, Changsha 410128, Peoples R China.

[Qin, Sidong; Wang, Ziqi; Dai, Zhijun; Hu, Shengnan; Wang, Yongqiang; Zhou, Wei; Fan, Yanjun; Cao, Yixiang] Hunan Agr Univ, Hunan Prov Key Lab Biol & Control Plant Dis & Inse, Changsha 410128, Peoples R China.

[Fan, Yanjun] Shanxi Prov Jincheng City Landscaping Serv Ctr, Jincheng 048000, Shanxi, Peoples R China.

[Liu, Qiyuan] Jiangxi Agr Univ, Coll Agron, Key Lab Crop Physiol Ecol & Genet Breeding, Minist Educ, Nanchang 330045, Peoples R China.

[Tan, Siqiao] Hunan Agr Univ, Coll Informat & Intelligence, Changsha 410128, Peoples R China.

通讯机构：

[Siqiao Tan] C

[Wei Zhou] H

College of Information and Intelligence, Hunan Agricultural University, Changsha, 410128, China<&wdkj&>Hunan Provincial Engineering and Technology Research Center for Agricultural Big Data Analysis and Decision-Making, Hunan Agricultural University, Changsha, 410128, China<&wdkj&>Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha, 410128, China

语种：

英文

关键词：

Arabidopsis thaliana;Brassica napus;Genomic sequence feature;Mitochondrial genomes;Oryza sativa;RNA editing Site;Support vector machine;iPReditor-CMG

期刊：

Phytochemistry

ISSN：

0031-9422

年：

2022

卷：

200

页码：

113222

DOI：

10.1016/j.phytochem.2022.113222

基金类别：

National Natural Science Foundation of China [31960418, 31701164, 31301388]; Hunan Provincial Natural Science Foundation of China [2021JJ30355, 2018JJ3238]; Research Foundation of Education Bureau of Hunan Province of China [19A214]

机构署名：

本校为第一机构

院系归属：

植物保护学院

摘要：

In crops, RNA editing is one of the most important post-transcriptional processes in which specific cytidines (C) in virtually all mitochondrial protein-coding genes are converted to uridines (U). Despite extensive recent research in RNA editing, exploring all of the C-to-U editing events efficiently on the genomic scale remains challengeable. Developing accurate prediction methods for the detection of RNA editing sites would dramatically reduce experimental determination. Therefore, we propose a novel method, iPReditor-CMG (improved predictive RNA editor for crop mitochondrial genomes), to pr...

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iPReditor-CMG: Improving a predictive RNA editor for crop mitochondrial genomes using genomic sequence features and an optimal support vector machine

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