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Target-mediated competitive hybridization of hairpin probes for kanamycin detection based on exonuclease III cleavage and DNAzyme catalysis

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成果类型:
期刊论文
作者:
Pan, Jiafeng;Deng, Fang;Zeng, Lingwen;Liu, Zhi;Chen, Junhua
通讯作者:
Liu, Zhi(tigerzhiliu@126.com);Chen, Junhua(222chenjunhua@163.com)
作者机构:
[Liu, Zhi; Pan, Jiafeng; Deng, Fang] Hunan Agr Univ, Coll Biosci & Biotechnol, Changsha 410128, Peoples R China.
[Pan, Jiafeng; Deng, Fang; Chen, Junhua] Guangdong Acad Sci, Natl Reg Joint Engn Res Ctr Soil Pollut Control &, Inst Ecoenvironm & Soil Sci, Guangdong Key Lab Integrated Agroenvironm Pollut, Guangzhou 510650, Peoples R China.
[Zeng, Lingwen] Guangdong Langyuan Biotechnol Co LTD, Foshan 528313, Peoples R China.
[Zeng, Lingwen] Foshan Univ, Sch Food Sci & Engn, Foshan 528231, Peoples R China.
通讯机构:
[Zhi Liu] C
[Junhua Chen] N
College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China<&wdkj&>National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou, China
语种:
英文
关键词:
Antibiotic;Kanamycin;Competitive hybridization;Exonuclease III;DNAzyme;Aptamer
期刊:
Analytical and Bioanalytical Chemistry
ISSN:
1618-2642
年:
2022
卷:
414
期:
29-30
页码:
8255-8261
基金类别:
This work was supported by the Guangdong Basic and Applied Basic Research Foundation (2021A1515012192 and 2019B1515210019), Foshan Science and Technology Innovation Team Project (2018IT100343), Wuhan Science and Technology Plan Project (2020030603012347), and the Key Research and Development Projects of Hubei Province (2020BBA053).
机构署名:
本校为第一机构
院系归属:
生物科学技术学院
摘要:
Based on aptamer recognition and target-mediated competitive hybridization of hairpin probes, we developed a fluorescence sensor for kanamycin (KAN) detection. The aptamer and KAN binding will open hairpin H1 to release the trigger DNA fragment, which can initiate the competitive hybridization between hairpins H2 and H3. Then, exonuclease III (Exo III) can cleave H2 and H3 to produce numerous DNA3 and DNA4. Through the synergetic hybridization among DNA1, DNA2, DNA3, and DNA4, an active Mg2+-DNAzyme can be formed. The cleavage reaction toward F...

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