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Quantitative Analysis of Genetic Relationship of Species Based on the Network for Protein-Coding DNA Sequences

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成果类型:
期刊论文
作者:
Peng, Yan;Liu, Yuewu*;Ruan, Sichun;Wei, Yulin
通讯作者:
Liu, Yuewu
作者机构:
[Peng, Yan] Hunan Agr Univ, Key Lab Crop Germplasm Innovat & Utilizat Hunan P, Changsha 410128, Hunan, Peoples R China.
[Ruan, Sichun; Liu, Yuewu; Wei, Yulin] Hunan Agr Univ, Coll Sci, Changsha 410128, Hunan, Peoples R China.
通讯机构:
[Liu, Yuewu] H
Hunan Agr Univ, Coll Sci, Changsha 410128, Hunan, Peoples R China.
语种:
英文
期刊:
MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY
ISSN:
0340-6253
年:
2016
卷:
75
期:
2
页码:
403-416
基金类别:
Foundation of Hunan Educational Committee, China [14C0570, 15B115]; Science and Technology Program of Hunan Province, China [2015JC3099]
机构署名:
本校为第一且通讯机构
院系归属:
理学院
摘要:
A novel quantitative analysis method of genetic relationship of species is presented, which is based on the network composed of 20 nodes corresponding to 20 amino acids and edges corresponding to their interactions. The degree of genetic relationship of species is determined by the distance of the vectors which consist of 40 elements corresponding to the out-degrees and in-degrees of 20 nodes. Compared with the classical methods, it avoids choosing the four reference directions corresponding to four bases of DNA sequence, whose optimal angles are very difficult to get. Moreover, our method is ...

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