PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes

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成果类型：

期刊论文

作者：

Zeng, Jiaxiong;Tu, Qichao;Yu, Xiaoli;Qian, Lu;Wang, Cheng;...

通讯作者：

Yan, Q.;He, Z.

作者机构：

[Yan, Qingyun; Qian, Lu; Liu, Fei; Zeng, Jiaxiong; Yu, Xiaoli; Shu, Longfei; Huang, Zhijian; Wang, Cheng; Liu, Shengwei; He, Jianguo; He, Zhili] Sun Yat Sen Univ, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Sch Environm Sci & Engn, Environm Microbi Res Ctr,State Key Lab Biocontrol, Guangzhou 510006, Peoples R China.

[Tu, Qichao] Shandong Univ, Inst Marine Sci & Technol, Qingdao 266237, Peoples R China.

[He, Zhili] Hunan Agr Univ, Coll Agron, Changsha 410128, Peoples R China.

通讯机构：

[Qingyun Yan; Zhili He] E

Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), State Key Laboratory of Biocontrol, Sun Yat-sen University, Guangzhou, China<&wdkj&>Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), State Key Laboratory of Biocontrol, Sun Yat-sen University, Guangzhou, China<&wdkj&>College of Agronomy, Hunan Agricultural University, Changsha, China

语种：

英文

关键词：

Phosphorus cycling gene/microorganism;Database;Accuracy;Comprehensiveness;Metagenome sequencing data

期刊：

Microbiome

ISSN：

2049-2618

年：

2022

卷：

期：

页码：

1-16

DOI：

10.1186/s40168-022-01292-1

基金类别：

National Natural Science Foundation of China [92051120, 91951207, 31770539]; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) [311021006, SML2020SP004, SML2021SP203]

机构署名：

本校为其他机构

院系归属：

农学院

摘要：

Phosphorus (P) is one of the most essential macronutrients on the planet, and microorganisms (including bacteria and archaea) play a key role in P cycling in all living things and ecosystems. However, our comprehensive understanding of key P cycling genes (PCGs) and microorganisms (PCMs) as well as their ecological functions remains elusive even with the rapid advancement of metagenome sequencing technologies. One of major challenges is a lack of a comprehensive and accurately annotated P cycling functional gene database. In this study, we constructed a well-curated P cycling database (PCycDB)...

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PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes

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