Alternative splicing and translation play important roles in hypoxic germination in rice

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成果类型：

期刊论文

作者：

Chen, Mo-Xian;Zhu, Fu-Yuan;Wang, Feng-Zhu;Ye, Neng-Hui;Gao, Bei;...

通讯作者：

Liu, Ying-Gao;Zhang, Jianhua

作者机构：

[Fan, Tao; Chen, Mo-Xian; Liu, Ying-Gao] Shandong Agr Univ, Coll Life Sci, State Key Lab Crop Biol, Tai An, Shandong, Peoples R China.

[Zhang, Jianhua; Chen, Mo-Xian; Zhu, Fu-Yuan] Nanjing Forestry Univ, Coll Biol & Environm, Coinnovat Ctr Sustainable Forestry Southern China, Nanjing, Jiangsu, Peoples R China.

[Hu, Qi-Juan; Chen, Mo-Xian; Zhu, Fu-Yuan] Chinese Univ Hong Kong, Shenzhen Res Inst, Shenzhen, Peoples R China.

[Wang, Feng-Zhu; Xiao, Shi; Xie, Li-Juan; Su, Ze-Zhuo; Zhao, Shan-Shan] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangzhou, Guangdong, Peoples R China.

[Wang, Feng-Zhu; Xiao, Shi; Xie, Li-Juan; Su, Ze-Zhuo; Zhao, Shan-Shan] Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, Guangzhou, Guangdong, Peoples R China.

通讯机构：

[Liu, Ying-Gao] S

[Zhang, Jianhua] N

[Zhang, Jianhua] H

[Zhang, Jianhua] C

Shandong Agr Univ, Coll Life Sci, State Key Lab Crop Biol, Tai An, Shandong, Peoples R China.

语种：

英文

关键词：

Alternative splicing;hypoxia;Oryza sativa;proteogenomics;seed germination;splicing factor;translation initiation

期刊：

JOURNAL OF EXPERIMENTAL BOTANY

ISSN：

0022-0957

年：

2019

卷：

期：

页码：

817-833

DOI：

10.1093/jxb/ery393

基金类别：

Natural Science Foundation of Guangdong ProvinceNational Natural Science Foundation of Guangdong Province [2018A030313030]; Shandong 'Double Top' Program; China Postdoctoral Science FoundationChina Postdoctoral Science Foundation [2017M622801, 2018M633162]; Postgraduate Research & Practice Innovative Program of Jiangsu Province [KYCX18_2416]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31771701, 31701341]; Innovative Training Program of Nantong University College Students 2017 [201710304049Z]; Hong Kong Research Grant CouncilHong Kong Research Grants Council [AoE/M-05/12, AoE/M-403/16, GRF 14122415, 14160516, 14177617]

机构署名：

本校为其他机构

摘要：

Post-transcriptional mechanisms (PTMs), including alternative splicing (AS) and alternative translation initiation (ATI), may explain the diversity of proteins involved in plant development and stress responses. Transcriptional regulation is important during the hypoxic germination of rice seeds, but the potential roles of PTMs in this process have not been characterized. We used a combination of proteomics and RNA sequencing to discover how AS and ATI contribute to plant responses to hypoxia. In total, 10 253 intron-containing genes were ident...

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Alternative splicing and translation play important roles in hypoxic germination in rice

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