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The genomic basis of geographic differentiation and fiber improvement in cultivated cotton

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成果类型:
期刊论文
作者:
He, Shoupu;Sun, Gaofei;Geng, Xiaoli;Gong, Wenfang;Dai, Panhong;...
通讯作者:
Du, Xiongming
作者机构:
[Peng, Zhen; He, Shoupu; Du, Xiongming; Pang, Baoyin; Dai, Panhong; Pan, Zhaoe; Hu, Daowu; Gong, Wenfang; Jia, Yinhua; Fu, Guoyong; Wang, Liru; Geng, Xiaoli; Wang, Liyuan; Chen, Baojun] Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Anyang, Peoples R China.
[Sun, Gaofei] Anyang Inst Technol, Sch Comp Sci & Informat Engn, Anyang, Peoples R China.
[Shi, Weijun; Wang, Junduo] Xinjiang Acad Agr Sci, Res Inst Econ Crops, Urumqi, Peoples R China.
[Xiao, Songhua] Jiangsu Acad Agr Sci, Inst Ind Crops, Nanjing, Peoples R China.
[Cui, Shufang] Hebei Acad Agr & Forestry Sci, Inst Cotton, Shijiazhuang, Hebei, Peoples R China.
通讯机构:
[Du, Xiongming] S
State Key Laboratory of Cotton Biology, Institute of Cotton Research of the Chinese Academy of Agricultural Sciences, Anyang, China
语种:
英文
期刊:
Nature Genetics
ISSN:
1061-4036
年:
2021
卷:
53
期:
6
页码:
916-924
基金类别:
This work was funded by the National Key Technology R&D Program, the Ministry of Science and Technology (grant nos. 2016YFD0100203 to X.D. and S.H. and 2016YFD0100306 to S.H.), the National Natural Science Foundation of China (grant nos. 31871677 to S.H. and 31671746 to X.D.), the Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences and the National Crop Germplasm Resources Center (grant no. NICGR2019-12 to Y.J.). We thank the National Mid-term Gene Bank for Cotton at the Institute of Cotton Research, Chinese Academy of Agricultural Sciences, for providing the seeds; J. A. Udall of Southern Plains Agricultural Research Center, US Department of Agriculture for sharing the sequencing data in NCBI (PRJNA414461); K. Wang and F. Liu of the Institute of Cotton Research, Chinese Academy of Agricultural Sciences for providing the DNA samples of wild species and landraces; and J. Ma and X. Li (Research Institute of Economic Crops, Xinjiang Academy of Agricultural Sciences), Y. Li and C. Ye (Biotechnology Research Institute of Xinjiang Academy of Agricultural and Reclamation Sciences), Y. Qian and W. Jin (Institute of Cotton, Hebei Academy of Agriculture and Forestry Sciences), J. Liu and J. Zhao (Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences) and Z. Zhou (Hunan Agricultural University) for assisting in planting cottons and investigating phenotypes.
机构署名:
本校为其他机构
院系归属:
农学院
摘要:
Genomic variations in 3,248 tetraploid cotton germplasms and multi-environmental genome-wide association analyses provide insights into the basis of geographic differentiation and fiber improvement in cultivated cotton. Large-scale genomic surveys of crop germplasm are important for understanding the genetic architecture of favorable traits. The genomic basis of geographic differentiation and fiber improvement in cultivated cotton is poorly understood. Here, we analyzed 3,248 tetraploid cotton genomes and confirmed that the extensive chromosome inversions on chromosomes A06 and A08 underlies t...

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