Chromosome-level assembly of the Hypophthalmichthys molitrix (Cypriniformes: Cyprinidae) genome provides insights into its ecological adaptation

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成果类型：

期刊论文

作者：

Zhou, Yi;Qin, Weiling;Zhong, Huan*;Zhang, Hong;Zhou, Luojing

通讯作者：

Zhong, Huan

作者机构：

[Zhou, Yi; Qin, Weiling] Hunan Normal Univ, Life Sci Coll, State Key Lab Dev Biol Freshwater Fish, Changsha, Hunan, Peoples R China.

[Zhong, Huan] Hunan Agr Univ, Coll Anim Sci & Technol, Hunan Res Ctr Engn Technol Utilizat Distinct Aqua, Changsha, Hunan, Peoples R China.

[Zhang, Hong] Beibu Gulf Univ, Guangxi Key Lab Beibu Gulf Marine Biodivers Conse, Qinzhou, Peoples R China.

[Zhou, Luojing] Changsha Univ, Hunan Prov Key Lab Nutr & Qual Control Aquat Anim, Changsha, Hunan, Peoples R China.

通讯机构：

[Zhong, Huan] C

Collaborative Innovation Center for Efficient and Health Production of Fisheries in Hunan Province, College of Animal Science and Technology, Hunan Agricultural University, Changsha, China. Electronic address:

语种：

英文

关键词：

Whole genome sequencing;Chromosomal-level;Hypophthalmichthys molitrix;Positive selection;Ecological adaptation

期刊：

Genomics

ISSN：

0888-7543

年：

2021

卷：

113

期：

页码：

2944-2952

DOI：

10.1016/j.ygeno.2021.06.024

基金类别：

National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31672627, 31760756]; Natural Science Foun-dation of GuangxiNational Natural Science Foundation of Guangxi Province [2017GXNSFFA198001]; Hunan Pro-vincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals [2018TP1027]; Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation [2020KB02]

机构署名：

本校为其他机构

院系归属：

动物科学技术学院

摘要：

Hypophthalmichthys molitrix (silver carp) is phytoplanktivorous and is an economically and ecologically important fish species. As a well-known invasive species, a number of factors associated with the ecological adaptations of this species are largely unknown. Here, we present a chromosomal-level assembly of the species based on the PacBio Sequel II platform and Hi-C scaffolding technology. Based on the high-quality genome sequences and previous genome sequencing projects, a number of genes that were probably subject to positive selection reside in the genome of H. molitrix, and the last comm...

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Chromosome-level assembly of the Hypophthalmichthys molitrix (Cypriniformes: Cyprinidae) genome provides insights into its ecological adaptation

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